PUBLICATION

ARCHIVEー過去の出版実績ー

2025
Knockout of an SPX-related gene for polyphosphate synthetase accelerates phosphate-starvation responses in the oleaginous microalga Nannochloropsis oceanica.
Okazaki K., Hori K., Iwai M., Kurita T., Shimizu S., Nomura S., Saito F., Maeda S., Takami A., Yamamoto T., Ohta H. & Sakamoto, A.
Journal of Experimental Botany, eraf171
Pubmed
2024
SENSITIVE TO FREEZING2 is crucial for growth of Marchantia polymorpha under acidic conditions
Shimizu S., Hori K., Ishizaki K., Ohta H., Shimojima M.
Journal of Plant Research
Pubmed
An ABCB transporter regulates anisotropic cell expansion via cuticle deposition in the moss Physcomitrium patens
Zhang, L., Sasaki‐Sekimoto, Y., Kosetsu, K., Aoyama, T., Murata, T., Kabeya, Y.,Sato, Y., Koshimizu, S., Shimojima, M., Ohta, H., Hasebe, M.,Ishikawa, M.
New Phytologist
Pubmed
2023
Phosphatidic acid phosphohydrolase modulates glycerolipid synthesis in Marchantia polymorpha and is crucial for growth under both nutrient-replete and -deficient conditions
Shimojo M., Nakamura M., Kitaura G., Ihara Y., Shimizu S., Hori K., Iwai M., Ohta H., Ishizaki K., & Shimojima M.
Planta
Pubmed
Cis-regulatory elements and transcription factors related to auxin signaling in the streptophyte algae Klebsormidium nitens.
Tounosu N, Sesoko K, Hori K, Shimojima M, Ohta H
Scientific Reports 13, 9635
Pubmed Scientific Reports
2022
Developing a platform for production of the oxylipin KODA in plants
Ihara, Y., Wakamatsu, T., Yokoyama, M., Maezawa, D., Ohta, H., Shimojima, M.
Journal of Experimental Botany.
Pubmed PMC
2021
Transcriptomic analysis of resistant and susceptible responses in a new model root-knot nematode infection system using Solanum torvum and Meloidogyne arenaria.
Kazuki Sato, Taketo Uehara, Julia Holbein, Yuko Sasaki-Sekimoto, Pamela Gan, Takahiro Bino, Katsushi Yamaguchi, Yasunori Ichihashi, Noriko Maki, Shuji Shigenobu, Hiroyuki Ohta, Rochus B Franke, Shahid Siddique, Florian MW Grundler, Takamasa Suzuki, Yasuhiro Kadota, Ken Shirasu
Frontiers in plant science.
Pubmed PMC
Methods of Lipid Analyses for Microalgae: Charophytes, Eustigmatophytes, and Euglenophytes.
Masako Iwai, Shiori Shibata, Hiroyuki Ohta, Koichiro Awai
Plant Lipids.
Pubmed Springer
Excretion of triacylglycerol as a matrix lipid facilitating apoplastic accumulation of a lipophilic metabolite shikonin.
Kanade Tatsumi, Takukji Ichino, Natsumi Isaka, Akifumi Sugiyama, Yozo Okazaki, Yasuhiro Higashi, Masataka Kajikawa, Hideya Fukuzawa, Kiminori Toyooka, Mayo Sato, Ikuyo Ichi, Koichiro Shimomura, Hiroyuki Ohta, Kazuki Saito, Kazufumi Yazaki
bioRxiv.
bioRxiv
Characterization of the gelation and resulting network of a mixed-protein gel derived from sodium caseinate and ovalbumin in the presence of glucono-ﾎｴ-lactone.
Naoko Yuno-Ohta, Naoya Shimonomura, Yuuka Hoshi, Mathieu Leocmach, Koichi Hori, Hiroyuki Ohta
Colloids and Surfaces B: Biointerfaces.
Pubmed ELSEVIER
RCB-mediated chlorophagy caused by oversupply of nitrogen suppresses phosphate-starvation stress in plants.
Yushi Yoshitake, Sakuya Nakamura, Daiki Shinozaki, Masanori Izumi, Kohki Yoshimoto, Hiroyuki Ohta, Mie Shimojima
Plant physiology.
Pubmed Oxford
Altitudinal differentiation in the leaf wax-mediated flowering bud protection against frost in a perennial Arabidopsis.
Genki Yumoto, Yuko Sasaki-Sekimoto, Biva Aryal, Hiroyuki Ohta, Hiroshi Kudoh
Oecologia.
Pubmed Springer
Recycling of the major thylakoid lipid MGDG and its role in lipid homeostasis in Chlamydomonas reinhardtii.
Masako Iwai, Yui Yamada-Oshima, Kota Asami, Takashi Kanamori, Hideya Yuasa, Mie Shimojima, Hiroyuki Ohta
Plant Physiology.
Pubmed Oxford
2020
MYB‐like transcription factor NoPSR1 is crucial for membrane lipid remodeling under phosphate starvation in the oleaginous microalga Nannochloropsis oceanica.
Hiroki Murakami, Natsue Kakutani, Yunato Kuroyanagi, Masako Iwai, Koichi Hori, Mie Shimojima, Hiroyuki Ohta
FEBS letters.
Pubmed Wiley
Efficient and multiplexable genome editing using Platinum TALENs in oleaginous microalga, Nannochloropsis oceanica NIES-2145.
Tomokazu Kurita, Keishi Moroi, Masako Iwai, Kumiko Okazaki, Shinsuke Shimizu, Seiji Nomura, Fumihiko Saito, Shinichiro Maeda, Akihide Takami, Atsushi Sakamoto, Hiroyuki Ohta, Tetsushi Sakuma, Takashi Yamamoto
Genes to Cells.
Pubmed Wiley
2019
SnRK2 protein kinases represent an ancient system in plants for adaptation to a terrestrial environment.
Akihisa Shinozawa, Ryoko Otake, Daisuke Takezawa, Taishi Umezawa, Kenji Komatsu, Keisuke Tanaka, Anna Amagai, Shinnosuke Ishikawa, Yurie Hara, Yasuko Kamisugi, Andrew C Cuming, Koichi Hori, Hiroyuki Ohta, Fuminori Takahashi, Kazuo Shinozaki, Takahisa Hayashi, Teruaki Taji, Yoichi Sakata
Communications biology.
Pubmed PMC
Autophagy-mediated regulation of lipid metabolism and its impact on the growth in algae and seed plants.
Yushi Yoshitake, Hiroyuki Ohta, Mie Shimojima
Frontiers in plant science.
Pubmed PMC
A homolog of Arabidopsis SDP1 lipase in Nannochloropsis is involved in degradation of de novo-synthesized triacylglycerols in the endoplasmic reticulum.
Takashi Nobusawa, Kaoru Yamakawa-Ayukawa, Fumihiko Saito, Seiji Nomura, Akihide Takami, Hiroyuki Ohta
(BBA)-Molecular and Cell Biology of Lipids.
Pubmed PMC
Lipid remodeling under acidic conditions and its interplay with low Pi stress in Arabidopsis.
Masato Murakawa, Hiroyuki Ohta, Mie Shimojima
Plant molecular biology.
Pubmed PMC
Lipid remodeling regulator 1 (LRL1) is differently involved in the phosphorus‐depletion response from PSR1 in Chlamydomonas reinhardtii.
Nur A Hidayati, Yui Yamada‐Oshima, Masako Iwai, Takashi Yamano, Masataka Kajikawa, Nozomu Sakurai, Kunihiro Suda, Kanami Sesoko, Koichi Hori, Takeshi Obayashi, Mie Shimojima, Hideya Fukuzawa, Hiroyuki Ohta
The Plant Journal.
Pubmed BMC
2018
Physcomitrella MADS-box genes regulate water supply and sperm movement for fertilization.
Shizuka Koshimizu, Rumiko Kofuji, Yuko Sasaki-Sekimoto, Masahide Kikkawa, Mie Shimojima, Hiroyuki Ohta, Shuji Shigenobu, Yukiko Kabeya, Yuji Hiwatashi, Yosuke Tamada, Takashi Murata, Mitsuyasu Hasebe,
Nature plants.
Pubmed npg
Complete Genome Sequence of the Nonheterocystous Cyanobacterium Pseudanabaena sp. ABRG5-3.
Naoyuki Tajima, Yu Kanesaki, Shusei Sato, Hirofumi Yoshikawa, Fumito Maruyama, Ken Kurokawa, Hiroyuki Ohta, Tomoyasu Nishizawa, Munehiko Asayama, Naoki Sato
Genome announcements.
Pubmed ACS Pub
Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons.
Alex De Mendoza, Amandine Bonnet, Dulce B Vargas-Landin, Nanjing Ji, Hongfei Li, Feng Yang, Ling Li, Koichi Hori, Jahnvi Pflueger, Sam Buckberry, Hiroyuki Ohta, Nedeljka Rosic, Pascale Lesage, Senjie Lin, Ryan Lister
Nature communications.
Pubmed PMC
Betaine Lipid Is Crucial for Adapting to Low Temperature and Phosphate Deficiency in Nannochloropsis.
Hiroki Murakami, Takashi Nobusawa, Koichi Hori, Mie Shimojima, Hiroyuki Ohta
Plant Physiology.
Pubmed PMC
Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.
Yusuke Kurokawa, Keisuke Nagai, Phung Danh Huan, Kousuke Shimazaki, Huangqi Qu, Yoshinao Mori, Yosuke Toda, Takeshi Kuroha, Nagao Hayashi, Saori Aiga, Jun-ichi Itoh, Atsushi Yoshimura, Yuko Sasaki-Sekimoto, Hiroyuki Ohta, Mie Shimojima, Al Imran Malik, Ole Pedersen, Timothy David Colmer, Motoyuki Ashikari
New Phytologist.
Pubmed Wiley
Changes of aliphatic C-H bonds in cyanobacteria during experimental thermal maturation in the presence or absence of silica as evaluated by FTIR microspectroscopy.
Motoko Igisu, Tadashi Yokoyama, Yuichiro Ueno, Satoru Nakashima, Mie Shimojima, Hiroyuki Ohta, Shigenori Maruyama
Geobiology.
Pubmed Wiley
Comprehensive analysis of cuticular wax components using GC X GC-MS.
Hiroyuki Ohta Yuko Sasaki-Sekimoto
Shimadzu Application Note.
Google
2017
GTR1 is a jasmonic acid and jasmonoyl-l-isoleucine transporter in Arabidopsis thaliana.
Yasuhiro Ishimaru, Takaya Oikawa, Takeshi Suzuki, Syohei Takeishi, Hideyuki Matsuura, Kosaku Takahashi, Shin Hamamoto, Nobuyuki Uozumi, Takafumi Shimizu, Mitsunori Seo, Hiroyuki Ohta, Minoru Ueda, 2017,Bioscience, biotechnology, and biochemistry.
Pubmed Oxford
Determination of the Absolute Configuration of a Monoglyceride Antibolting Compound and Isolation of Related Compounds from Radish Leaves (Raphanus sativus).
Tsuyoshi Ogihara, Naruki Amano, Yuki Mitsui, Kaien Fujino, Hiroyuki Ohta, Kosaku Takahashi, Hideyuki Matsuura
Journal of natural products.
Pubmed ACS Pub
Differently localized lysophosphatidic acid acyltransferases crucial for triacylglycerol biosynthesis in the oleaginous alga Nannochloropsis.
Takashi Nobusawa, Koichi Hori, Hiroshi Mori, Ken Kurokawa, Hiroyuki Ohta
The Plant Journal.
Pubmed Wiley
Primitive Auxin Response without TIR1 and Aux/IAA in the Charophyte Alga Klebsormidium nitens.
Kinuka Ohtaka, Koichi Hori, Yuri Kanno, Mitsunori Seo, Hiroyuki Ohta
Plant Physiology.
Pubmed PMC
FLUCTUATING-LIGHT-ACCLIMATION PROTEIN1, Conserved in Oxygenic Phototrophs, Regulates H⁺ Homeostasis and Non-Photochemical Quenching in Chloroplasts.
Ryoichi Sato, Masaru Kono, Kyohei Harada, Hiroyuki Ohta, Shinichi Takaichi, Shinji Masuda
Plant and Cell Physiology.
Pubmed Oxford
Arabidopsis phosphatidic acid phosphohydrolases are essential for growth under nitrogen-depleted conditions.
Yushi Yoshitake, Ryoichi Sato, Yuka Madoka, Keiko Ikeda, Masato Murakawa, Ko Suruga, Daisuke Sugiura, Ko Noguchi, Hiroyuki Ohta, Mie Shimojima
Frontiers in plant science.
Pubmed PMC
Co-expressed Pathways DataBase for Tomato: a database to predict pathways relevant to a query gene.
Takafumi Narise, Nozomu Sakurai, Takeshi Obayashi, Hiroyuki Ohta, Daisuke Shibata
BMC genomics.
Pubmed BMC
Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms).
Naoyuki Tajima, Kenji Saitoh, Shusei Sato, Fumito Maruyama, Mutsuo Ichinomiya, Shinya Yoshikawa, Ken Kurokawa, Hiroyuki Ohta, Satoshi Tabata, Akira Kuwata, Naoki Sato
Current genetics.
Pubmed Springer
2016
Eukaryotic components remodeled chloroplast nucleoid organization during the green plant evolution.
Yusuke Kobayashi, Mari Takusagawa, Naomi Harada, Yoichiro Fukao, Shohei Yamaoka, Takayuki Kohchi, Koichi Hori, Hiroyuki Ohta, Toshiharu Shikanai, Yoshiki Nishimura
Genome biology and evolution.
Pubmed PMC
ALCOdb: Gene coexpression database for microalgae.
Yuichi Aoki, Yasunobu Okamura, Hiroyuki Ohta, Kengo Kinoshita, Takeshi Obayashi
Plant and Cell Physiology.
Pubmed Oxford
TOR (target of rapamycin) is a key regulator of triacylglycerol accumulation in microalgae.
Sousuke Imamura, Yasuko Kawase, Ikki Kobayashi, Mie Shimojima, Hiroyuki Ohta, Kan Tanaka
Plant signaling & behavior.
Pubmed PMC
12-oxo-phytodienoic acid, a plant-derived oxylipin, attenuates lipopolysaccharide-induced inflammation in microglia.
Nozomi Taki-Nakano, Jun Kotera, Hiroyuki Ohta
Biochemical and biophysical research communications.
Pubmed ELSEVIER
Primitive extracellular lipid components on the surface of the charophytic alga Klebsormidium flaccidum and their possible biosynthetic pathways as deduced from the genome sequence.
Satoshi Kondo, Koichi Hori, Yuko Sasaki-Sekimoto, Atsuko Kobayashi, Tsubasa Kato, Naoko Yuno-Ohta, Takashi Nobusawa, Kinuka Ohtaka, Mie Shimojima, Hiroyuki Ohta
Frontiers in plant science.
Pubmed PMC
Tangled evolutionary processes with commonality and diversity in plastidial glycolipid synthesis in photosynthetic organisms.
Koichi Hori, Takashi Nobusawa, Tei Watanabe, Yuka Madoka, Hideyuki Suzuki, Daisuke Shibata, Mie Shimojima, Hiroyuki Ohta
(BBA)-Molecular and Cell Biology of Lipids.
Pubmed ELSEVIER
Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms).
Naoyuki Tajima, Kenji Saitoh, Shusei Sato, Fumito Maruyama, Mutsuo Ichinomiya, Shinya Yoshikawa, Ken Kurokawa, Hiroyuki Ohta, Satoshi Tabata, Akira Kuwata, Naoki Sato
Current genetics.
Pubmed Springer
2015
The jasmonate-responsive GTR1 transporter is required for gibberellin-mediated stamen development in Arabidopsis.
Hikaru Saito, Takaya Oikawa, Shin Hamamoto, Yasuhiro Ishimaru, Miyu Kanamori-Sato, Yuko Sasaki-Sekimoto, Tomoya Utsumi, Jing Chen, Yuri Kanno, Shinji Masuda, Yuji Kamiya, Mitsunori Seo, Nobuyuki Uozumi, Minoru Ueda, Hiroyuki Ohta
Nature communications.
Pubmed PMC
A highly sensitive quantification method for the accumulation of alarmone ppGpp in Arabidopsis thaliana using UPLC-ESI-qMS/MS.
Yuta Ihara, Hiroyuki Ohta, Shinji Masuda
Journal of plant research.
Pubmed Springer
An engineered lipid remodeling system using a galactolipid synthase promoter during phosphate starvation enhances oil accumulation in plants.
Mie Shimojima, Yuka Madoka, Ryota Fujiwara, Masato Murakawa, Yushi Yoshitake, Keiko Ikeda, Ryota Koizumi, Keiji Endo, Katsuya Ozaki, Hiroyuki Ohta
Frontiers in plant science.
Pubmed frontiers
Manipulation of oil synthesis in Nannochloropsis strain NIES-2145 with a phosphorus starvation-inducible promoter from Chlamydomonas reinhardtii.
Masako Iwai, Koichi Hori, Yuko Sasaki-Sekimoto, Mie Shimojima, Hiroyuki Ohta
Frontiers in microbiology.
Pubmed PMC
Target of rapamycin (TOR) plays a critical role in triacylglycerol accumulation in microalgae.
Sousuke Imamura, Yasuko Kawase, Ikki Kobayashi, Toshiyuki Sone, Atsuko Era, Shin-ya Miyagishima, Mie Shimojima, Hiroyuki Ohta, Kan Tanaka
Plant molecular biology.
Pubmed Springer
Biochemical characterization of allene oxide synthases from the liverwort Marchantia polymorpha and green microalgae Klebsormidium flaccidum provides insight into the evolutionary divergence of the plant CYP74 family.
Takao Koeduka, Kimitsune Ishizaki, Cynthia Mugo Mwenda, Koichi Hori, Yuko Sasaki-Sekimoto, Hiroyuki Ohta, Takayuki Kohchi, Kenji Matsui
Springer Berlin Heidelberg.
Pubmed Springer
Impact of the plastidial stringent response in plant growth and stress responses.
Mikika Maekawa, Rina Honoki, Yuta Ihara, Ryoichi Sato, Akira Oikawa, Yuri Kanno, Hiroyuki Ohta, Mitsunori Seo, Kazuki Saito, Shinji Masuda
Nature plants.
Pubmed npg
2014
Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
Yuko Sasaki-Sekimoto, Hikaru Saito, Shinji Masuda, Ken Shirasu, Hiroyuki Ohta
Plant signaling & behavior.
Pubmed PMC
Cyanobacterial monogalactosyldiacylglycerol-synthesis pathway is involved in normal unsaturation of galactolipids and low-temperature adaptation of Synechocystis sp. PCC 6803.
Yuichi Yuzawa, Mie Shimojima, Ryoichi Sato, Naoki Mizusawa, Keiko Ikeda, Mamie Suzuki, Masako Iwai, Koichi Hori, Hajime Wada, Shinji Masuda, Hiroyuki Ohta
(BBA)-Molecular and Cell Biology of Lipids.
Pubmed ELSEVIER
Mechanisms of induction of the stress-responsive transcription factors HsfA2 and DREB2A by 12-oxo-phytodienoic acid in Arabidopsis thaliana.
Shinji Masuda, Yoshihito Tokaji, Yuichi Kobayashi, Hiroyuki Ohta
Bioscience, biotechnology, and biochemistry.
Pubmed Oxford
Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum.
Naoyuki Tajima, Shusei Sato, Fumito Maruyama, Ken Kurokawa, Hiroyuki Ohta, Satoshi Tabata, Kohsuke Sekine, Takashi Moriyama, Naoki Sato
Journal of plant research.
Pubmed Springer
Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation.
Koichi Hori, Fumito Maruyama, Takatomo Fujisawa, Tomoaki Togashi, Nozomi Yamamoto, Mitsunori Seo, Syusei Sato, Takuji Yamada, Hiroshi Mori, Naoyuki Tajima, Takashi Moriyama, Masahiko Ikeuchi, Mai Watanabe, Hajime Wada, Koichi Kobayashi, Masakazu Saito, Tatsuru Masuda, Yuko Sasaki-Sekimoto, Kiyoshi Mashiguchi, Koichiro Awai, Mie Shimojima, Shinji Masuda, Masako Iwai, Takashi Nobusawa, Takafumi Narise, Satoshi Kondo, Hikaru Saito, Ryoichi Sato, Masato Murakawa, Yuta Ihara, Yui Oshima-Yamada,Kinuka Ohtaka, Masanori Satoh, Kohei Sonobe, Midori Ishii, Ryosuke Ohtani, Miyu Kanamori-Sato, Rina Honoki, Daichi Miyazaki, Hitoshi Mochizuki, Jumpei Umetsu, Kouichi Higashi, Daisuke Shibata, Yuji Kamiya, Naoki Sato, Yasukazu Nakamura, Satoshi Tabata, Shigeru Ida, Ken Kurokawa, Hiroyuki Ohta
Nature communications.
Pubmed PMC
Transcriptional regulation of thylakoid galactolipid biosynthesis coordinated with chlorophyll biosynthesis during the development of chloroplasts in Arabidopsis.
Koichi Kobayashi, Sho Fujii, Daichi Sasaki, Shinsuke Baba, Hiroyuki Ohta, Tatsuru Masuda, Hajime Wada
Frontiers in plant science.
Pubmed PMC
Monogalactosyldiacylglycerol synthesis in the outer envelope membrane of chloroplasts is required for enhanced growth under sucrose supplementation.
Masato Murakawa, Mie Shimojima, Yuichi Shimomura, Koichi Kobayashi, Koichiro Awai, Hiroyuki Ohta
Frontiers in plant science.
Pubmed PMC
Transcriptomic and lipidomic profiles of glycerolipids during Arabidopsis flower development.
Yuki Nakamura, Norman ZW Teo, Guanghou Shui, Christine HL Chua, Wei‐Fun Cheong, Sriram Parameswaran, Ryota Koizumi, Hiroyuki Ohta, Markus R Wenk, Toshiro Ito
New Phytologist.
Pubmed Wiley
Enhancement of extraplastidic oil synthesis in Chlamydomonas reinhardtii using a type-2 diacylglycerol acyltransferase with a phosphorus starvation-inducible promoter.
Masako Iwai, Keiko Ikeda, Mie Shimojima, Hiroyuki Ohta
Plant biotechnology journal.
Pubmed Wiley
Arabidopsis mutants affecting oxylipin signaling in photo-oxidative stress responses.
Masanori Satoh, Yoshihito Tokaji, Atsushi J Nagano, Ikuko Hara-Nishimura, Makoto Hayashi, Mikio Nishimura, Hiroyuki Ohta, Shinji Masuda
Plant physiology and biochemistry.
Pubmed ELSEVIER
Prediction of respective contribution of linear electron flow and PGR5-dependent cyclic electron flow to non-photochemical quenching induction.
Ryoichi Sato, Hiroyuki Ohta, Shinji Masuda
Plant physiology and biochemistry.
Pubmed ELSEVIER
Oxygenic photosynthesis without galactolipids.
Koichiro Awai, Hiroyuki Ohta, Naoki Sato
Proceedings of the National Academy of Sciences.
Pubmed PNAS
Cytoprotective effects of 12-oxo phytodienoic acid, a plant-derived oxylipin jasmonate, on oxidative stress-induced toxicity in human neuroblastoma SH-SY5Y cells.
Nozomi Taki-Nakano, Hiromitsu Ohzeki, Jun Kotera, Hiroyuki Ohta
(BBA)-General Subjects.
Pubmed ELSEVIER
2013
Inhibition of arabidopsis hypocotyl elongation by jasmonates is enhanced under red light in phytochrome B dependent manner.
Jing Chen, Kohei Sonobe, Narihito Ogawa, Shinji Masuda, Akira Nagatani, Yuichi Kobayashi, Hiroyuki Ohta
Journal of plant research.
Pubmed PMC
A predicted structure for the PixD–PixE complex determined by homology modeling, docking simulations, and a mutagenesis study.
Shukun Ren, Ryoichi Sato, Koji Hasegawa, Hiroyuki Ohta, Shinji Masuda
Biochemistry.
Pubmed ACS Pub
Whole-genome sequence of the purple photosynthetic bacterium Rhodovulum sulfidophilum strain W4.
Shinji Masuda, Koichi Hori, Fumito Maruyama, Shukun Ren, Saori Sugimoto, Nozomi Yamamoto, Hiroshi Mori, Takuji Yamada, Shusei Sato, Satoshi Tabata, Hiroyuki Ohta, Ken Kurokawa
Genome announcements.
Pubmed PMC
Basic helix-loop-helix transcription factors JASMONATE-ASSOCIATED MYC2-LIKE1 (JAM1), JAM2, and JAM3 are negative regulators of jasmonate responses in Arabidopsis.
SYuko Sasaki-Sekimoto, Yusuke Jikumaru, Takeshi Obayashi, Hikaru Saito, Shinji Masuda, Yuji Kamiya, Hiroyuki Ohta, Ken Shirasu
Plant physiology.
Pubmed Oxford
Molecular and Physiological Analysis of Al³⁺ and H⁺ Rhizotoxicities at Moderately Acidic Conditions.
TYasufumi Kobayashi, Yuriko Kobayashi, Toshihiro Watanabe, Jon E Shaff, Hiroyuki Ohta, Leon V Kochian, Tadao Wagatsuma, Thomas B Kinraide, Hiroyuki Koyama
Plant Physiology.
Pubmed Oxford
Differential regulation of two types of monogalactosyldiacylglycerol synthase in membrane lipid remodeling under phosphate-limited conditions in sesame plants.
Mie Shimojima, Takahide Watanabe, Yuka Madoka, Ryota Koizumi, Masayuki P Yamamoto, Kyojiro Masuda, Kyoji Yamada, Shinji Masuda, Hiroyuki Ohta
Frontiers in plant science.
Pubmed PMC
Role of galactolipid biosynthesis in coordinated development of photosynthetic complexes and thylakoid membranes during chloroplast biogenesis in Arabidopsis.
TYasufumi Kobayashi, Yuriko Kobayashi, Toshihiro Watanabe, Jon E Shaff, Hiroyuki Ohta, Leon V Kochian, Tadao Wagatsuma, Thomas B Kinraide, Hiroyuki Koyama
Plant Physiology.
Pubmed Wiley
2012
A novel biclustering approach with iterative optimization to analyze gene expression data.S Sutheeworapong,
M Ota, H Ohta, K Kinoshita
Advances and applications in bioinformatics and chemistry.
Pubmed PMC
Phylogeny of galactolipid synthase homologs together with their enzymatic analyses revealed a possible origin and divergence time for photosynthetic membrane biogenesis.
Yuichi Yuzawa, Hidenori Nishihara, Tsuyoshi Haraguchi, Shinji Masuda, Mie Shimojima, Atsushi Shimoyama, Hideya Yuasa, Norihiro Okada, Hiroyuki Ohta
DNA research.
Pubmed PMC
Domain-level identification and quantification of relative prokaryotic cell abundance in microbial communities by Micro‐FTIR spectroscopy.
Motoko Igisu, Ken Takai, Yuichiro Ueno, Manabu Nishizawa, Takuro Nunoura, Miho Hirai, Masanori Kaneko, Hiroshi Naraoka, Mie Shimojima, Koichi Hori, Satoru Nakashima, Hiroyuki Ohta, Shigenori Maruyama, Yukio Isozaki
Environmental Microbiology Reports.
Pubmed Wiley
Regulation of Root Greening by Light and Auxin/Cytokinin Signaling in Arabidopsis.
Koichi Kobayashi, Shinsuke Baba, Takeshi Obayashi, Mayuko Sato, Kiminori Toyooka, Mika Kerﾃ､nen, Eva-Mari Aro, Hidehiro Fukaki, Hiroyuki Ohta, Keiko Sugimoto, Tatsuru Masuda
The Plant Cell.
Pubmed PMC
lipid news.
Hiroyuki Ohta, Yuichi Yuzawa, Mie Sshimojima
Also inside this issue: When scientists become parents Annual award winners
Google
A PixD—PapB Chimeric Protein Reveals the Function of the BLUF Domain C-Terminal ﾎｱ-Helices for Light Signal Transduction.
Shukun Ren, Masahiro Sawada, Koji Hasegawa, Yoshihiro Hayakawa, Hiroyuki Ohta, Shinji Masuda
Plant and Cell Physiology.
Pubmed Oxford
Homology Modeling for Hyperchem Homology Modeling for Hyperchem
Shukun REN, Masahiro SAWADA, Koji HASEGAWA, Yoshihiro HAYAKAWA, Hiroyuki OHTA, Shinji MASUDA
Plant and cell physiology
Google
2011
Visualization of wounding-induced root-to-shoot communication in Arabidopsis.
Sogabe Y, Nakamura H, Nakagawa T, Hasegawa S, Asano T, Ohta H, Yamaguchi K, Mueller MJ, Kodama H, Nishiuchi T
Plant Signal Behav
Pubmed PMC
Gene expression analysis of wounding-induced root-to-shoot communication in Arabidopsis thaliana.
Hasegawa S, Sogabe Y, Asano T, Nakagawa T, Nakamura H, Kodama H, Ohta H, Yamaguchi K, Mueller MJ, Nishiuchi T
Plant Cell Environ
Pubmed Wiley
A monogalactosyldiacylglycerol synthase found in the green sulfur bacterium Chlorobaculum tepidum reveals important roles for galactolipids in photosynthesis.
Masuda, S., Harada, J., Yokono, M., Yuzawa, Y., Shimojima, M., Murofushi, K., Tanaka, H., Masuda, H., Murakawa, M., Haraguchi, T., Kondo, M., Nishimura, M., Yuasa, H., Noguchi, M., Oh-oka, H., Tanaka, A., Tamiaki, H. and Ohta, H
The Plant Cell
Pubmed Oxford
Critical regulation of galactolipid synthesis controls membrane differentiation and remodeling in distinct plant organs and following environmental changes.
Shimojima M, Ohta H
Prog Lipid Res
Pubmed ELSEVIER
Genomic Structure of the Cyanobacterium Synechocystis sp. PCC 6803 Strain GT-S.
Tajima N, Sato S, Maruyama F, Kaneko T, Sasaki NV, Kurokawa K, Ohta H, Kanesaki Y, Yoshikawa H, Tabata S, Ikeuchi M, Sato N
DNA Res
Pubmed PMC
2010
The KtrA and KtrE subunits are required for Na+-dependent K+ uptake by KtrB across the plasma membrane in Synechocystis sp. strain PCC 6803.
Zulkifli L, Akai M, Yoshikawa A, Shimojima M, Ohta H, Guy HR, Uozumi N.
J Bacteriol. 192(19):5063-70.
Biochemical and physiological characterization of a BLUF protein-EAL protein complex involved in blue light-dependent degradation of cyclic diguanylate in the purple bacterium Rhodopseudomonas palustris.
Kanazawa, T., Ren, S., Maekawa, M., Hasegawa, K., Arisaka, F., Hyodo, M., Hayakawa, Y., Ohta, H. and Masuda, S.
Biochemistry 49: 10647-10655.
Activation of the chloroplast monogalactosyldiacylglycerol synthase MGD1 by phosphatidic acid and phosphatidylglycerol.
Dubots E, Audry M, Yamaryo Y, Bastien O, Ohta H, Breton C, Marechal E, Block MA.
J Biol Chem. 26;285(9):6003-11.
Involvement of auxin signaling mediated by IAA14 and ARF7/19 in membrane lipid remodeling during phosphate starvation.
Narise T, Kobayashi K, Baba S, Shimojima M, Masuda S, Fukaki H, Ohta H
Plant Mol Biol. 72(4-5):533-44.
2009
Arabidopsis lipins mediate eukaryotic pathway of lipid metabolism and cope critically with phosphate starvation.
Nakamura, Y., Koizumi, R., Shui, G., Shimojima, M., Wenk, M.R., Ito, T., Ohta, H.
Proc. Natl. Acad. Sci. USA 2009, 106, 20978-20983
Micro-FTIR spectroscopic signatures of Bacterial lipids in Proterozoic microfossils.
Igisu M, Uenod Y, Shimojima M, Nakashima S, Stanley M. Awramikg, Ohta H, Maruyama S.
Precambrian Research. 173 19-26
A Chloroplastic UDP-Glucose Pyrophosphorylase from Arabidopsis Is the Committed Enzyme for the First Step of Sulfolipid Biosynthesis.
Okazaki Y, Shimojima M, Sawada Y, Toyooka K, Narisawa T, Mochida K, Tanaka H, Matsuda F, Hirai A, Hirai MY, Ohta H, Saito K.
Plant Cell.21(3):892-909.
Prolamellar bodies formed by cyanobacterial protochlorophyllide oxidoreductase in Arabidopsis
Masuda, S., Ikeda, R., Masuda, T., Hashimoto, H., Tsuchiya, T., Kojima, H., Nomata, J., Fujita, Y., Mimuro, M., Ohta, H. and Takamiya, K.
Plant J.58:952-960.
Activation of Galactolipid Biosynthesis in Development of Pistils and Pollen Tubes.
Nakamura, Y., Kobayashi, K., Ohta, H.
Plant Physiol Biochem.47(6):535-539.
Type B monogalactosyldiacylglycerol synthases are involved in phosphate starvation induced lipid remodeling and are crucial for low-phosphate adaptation.
Kobayashi K, Awai K, Nakamura M, Nagatani A, Masuda T, and Ohta H.
Plant J.57(2):322-31.
Temperature-dependent hyper-activation of monoglucosyldiacylglycerol synthase is post-translationally regulated in Synechocystis sp. PCC 6803.
Shimojima M, Tsuchiya M and Ohta H
FEBS Lett, 583, 2372-2376.
ATTED-II provides coexpressed gene networks for Arabidopsis
Obayashi T, Hayashi S, Saeki M, Ohta H, Kinoshita K.
Nucleic Acids Res., 37, D987-91.
Type A and type B monogalactosyldiacylglycerol synthases are spatially and functionally separated in plastids of higher plants.
Kobayashi K, Nakamura Y, Ohta H
Plant Physiol Biochem. 47(6):518-525.
2008
Phospholipase C5 (NPC5) is involved in galactolipid accumulation during phosphate limitation in leaves of Arabidopsis.
Gaude N., Nakamura Y., Scheible W.-R. Ohta H. and Dormann P.
Plant J. 56(1):28-39.
COXPRESdb: a database of coexpressed gene networks in mammals.
Obayashi, T, Hayashi S, Shibaoka M, Saeki M, Ohta H, Kinoshita K,
Nucleic Acids Res. Database issue ,Oxford University Press,:77-82.
The bacterial stringent response, conserved in chloroplasts, controls plant fertilization.
Masuda, S., Mizusawa, K., Narisawa, T., Tozawa, Y., Ohta, H. and Takamiya, K.
Plant Cell Physiol. 49: 135-141.
Expression profiling of four RelA/SpoT-like proteins, homologues of bacterial stringent factors, in Arabidopsis thaliana.
Mizusawa, K., Masuda, S. and Ohta, H.
Planta 228: 553-562.
Possible targets of "magic spots" in plant signaling.
Masuda, S., Tozawa, Y. and Ohta, H.
Plant Signaling Behavior. 3:1021-1023
Crucial role in light signal transduction for the conserved Met93 of the BLUF protein PixD/Slr1694.
Masuda, S., Hasegawa, K., Ohta, H. and Ono, T.
Plant Cell Physiol. 49(10):1600-6.
2007
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
Obayashi, T., Kinoshita, K., Nakai, K., Shibaoka, M., Hayashi, S., Saeki, M., Shibata, D., Saito, K., Ohta, H.,
Nucl. Acids Res. Database Issue, 863-869.
The critical role of a hydrogen bond between Gln63 and Trp104 in the blue-light sensing BLUF domain that controls AppA activity.
Masuda S, Tomida Y, Ohta H and Takamiya K
J. Mol. Biol. 368: 1223-1230.
Induction of isoforms of tetrapyrrole biosynthetic enzymes, AtHEMA2 and AtFC1, under stress conditions and their physiological functions in Arabidopsis.
Nagai S, Koide M, Takahashi S, Kikuta A, Aono M, Sasaki-Sekimoto Y, Ohta H, Takamiya K, Masuda T
Plant Physiol. 144, 1039-51.
The diacylglycerol forming pathways differ among floral organs of Petunia hybrida.
Nakamura Y and Ohta H
FEBS Lett. 581, 5475-5479.
The significance of Type II and PrxQ peroxiredoxins for antioxidative stress response in the purple bacterium Rhodobacter sphaeroides.
Wakita M, Masuda S, Motohashi K, Hisabori T, Ohta H and Takamiya K
J. Biol. Chem. 282: 27792-27801.
Plastidic phosphatidic acid phosphatases identified in a distinct subfamily of lipid phosphate phosphatase with prokaryotic origin
Nakamura Y., Tsuchiya M., Ohta, H.
J. Biol. Chem. 282, 29013-29021.
Galactolipid synthesis in chloroplast inner envelope is essential for proper thylakoid biogenesis, photosynthesis, and embryogenesis.
Kobayashi, K, Kondo M, Fukuda H, Nishimura M, and Ohta H
Proc. Natl. Acad. Sci. USA 104, 17216-17221.
2006
Comparative Genomic Analysis Revealed a Gene for Monoglucosyldiacylglycerol Synthase, an Enzyme for Photosynthetic Membrane Lipid Synthesis in Cyanobacteria.
Awai, K., Kakimoto, T., Awai, C., Kaneko, T., Nakamura, Y., Takamiya, K., Wada, H., and Ohta, H.
Plant Physiol.141,1120-1127.
In vitro reconstitution of monogalactosyldiacylglycerol (MGDG) synthase regulation by thioredoxin.
Yamaryo, Y., Motohashi, K., Takamiya, K., Hisabori, T. Ohta, H.
FEBS Lett.580 4086-4090.
Membrane lipid alteration during phosphate starvation is regulated by phosphate signaling and auxin/cytokinin cross-talk.
Kobayashi, K., Masuda, T., Takamiya, K. and Ohta, H.
Plant J. 47, 238-248.
2005
12-oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis.
Taki, N., Sasaki-Sekimoto, Y., Obayashi, T., Kikuta, A., Kobayashi, K., Ainai, T., Yagi, K., Sakurai, N.,Suzuki, H., Masuda, T., Takamiya, K., Shibata, D., Kobayashi, Y., and Ohta, H.
Plant Physiol.139:1268-1283
Identification of a Novel Cis-Element Exhibiting Cytokinin-Dependent Protein Binding in Vitro in the 5'-region of NADPH-Protochlorophyllide Oxidoreductase Gene in Cucumber.
Fusada N, Masuda T, Kuroda H, Shimada H, Ohta H, Takamiya K.
Plant Mol Biol.59.4:631-645
Coordinated activation of metabolic pathways for antioxidants and defense compounds by jasmonates and their roles in stress tolerance in Arabidopsis thaliana.
Sasaki-Sekimoto, Y., Taki, N., Obayashi, T., Aono, M., Matsumoto, F., Nozomu Sakurai, N., Suzuki, H., Y-Hirai, M., Noji, M., Saito, K., Masuda, T., Takamiya, K., Shibata, D., and Ohta, H.
Plant J.44.653-668.
KaPPA-View. A Web-Based Analysis Tool for Integration of Transcript and Metabolite Data on Plant Metabolic Pathway Maps.
T.Tokimatsu, N. Sakurai, H. Suzuki, H. Ohta, K. NIshitani, T. Koyama, T. Umezawa, N. Misawa, K. Saito and D. Shibata
Plant Physiol.138.1289-1300.
A novel phosphatidylchline-hydrolyzing phospholipase C induced by phosphate starvation.
Y. Nakamura, K. Awai, T. masuda, Y. Yoshioka, K. Takamiya, H. Ohta
J. Biol. Chem.280.9:7469-7476.
Ferredoxin-dependent glutamate synthase moonlights in plant sulfolipid biosynthesis by forming a complex with SQD1.
Shimojima M, Hoffmann-Benning S, Garavito RM, Benning C.
Arch Biochem Biophys. 436.206-14.
2004
ARC3, a chloroplast division factor, is a chimera of prokaryotic FtsZ and part of eukaryotic phosphatidylinositol-4-phosphate 5-kinase.
Shimada, H., Koizumi, M., Kuroki, K., Mochizuki, M., Fujimoto, H., Ohta, H., Masuda T., and Takamiya, K.
Plant Cell Physiol.45.8:960-967
Gene expression profiling of the tetrapyrrole metabolic pathway in Arabidopsis thaliana with a mini-array system.
Matsumoto, F., Obayashi, T., Sasaki-Sekimoto, Y., Ohta, H., Takamiya, K., and Masuda, T.
Plant Physiol., 135(4):2379-91.
Arabidopsis Type B monogalactosyldiacylglycerol synthase genes are expressed during pollen tube growth and induced by phosphate starvation.
Kobayashi, K., Awai, K., Takamiya, K., and Ohta, H.
Plant Physiol., 134: 640-648.
Distinctive features of plant organs characterized by global analysis of gene expression in Arabidopsis.
Obayashi, T., Okegawa, T., Sasaki-Sekimoto, Y., Shimada, H., Masuda, T., Asamizu, E., Nakamura, Y., Shibata, D., Tabata, S., Takamiya, K. and Ohta, H.
DNA Res., 11: 11-25.
2003
Digalactosyldiacylglycerol is a major glycolipid in floral organs of Petunia hybrida.
Nakamura, Y., Arimitsu, H., Yamaryo, Y., Awai, K., Masuda, T., Shimada, H., Takamiya, K. and Ohta, H.
Lipids, 38: 1107-1112.
Functional analysis of isoforms of NADPH:protochlorophyllide oxidoreductase (POR), PORB and PORC, in Arabidopsis thaliana.
Masuda, T., Fusada, N., Oosawa, N., Takamatsu, K., Yamamoto, Y.Y., Ohto, M., Nakamura, K., Goto, K., Shibata, D., Shirano, Y, Hayashi, H., Kato, T., Tabata, S., Shimada, H., Ohta, H. and Takamiya, K.
Plant Cell Physiol.,44: 963-974.
Light and cytokinin play a cooperative role in MGDG synthesis in greening cucumber cotyledons.
Yamaryo, Y., Kanai, D., Awai, K., Shimojima, M., Masuda, T., Shimada, H., Takamiya, K. and Ohta, H.
Plant Cell Physiol.,44: 844-855.
Subcellular localization of two types of ferrochelatase in cucumber.
Masuda, T., Suzuki, T., Shimada, H., Ohta, H. and Takamiya, K.
Planta, 217: 602-609.
Chlorophyllase as a serine hydrolase: Identification of a putative catalytic triad.
Tsuchiya, T., Suzuki, T., Yamada, T., Shimada, H., Masuda, T., Ohta, H. and Takamiya, K.
Plant Cell Physiol., 44: 96-101.
Monitoring of 12-oxo-phytodienoic acid (OPDA)-induced expression changes in Arabidopsis cDNA macroarray.
Sasaki-Sekimoto, Y., Obayashi, T., Matsuumi, M., Kobayashi, Y., Asamizu, E., Shibata, D., Nakamura, Y., Masuda, T., Shimada, H., Takamiya, K., Tabata, S. and Ohta, H.
 In Advanced Research on Plant Lipids, Murata, N., Yamada, M., Nishida, I., Okuyama, H., Sekiya, J., Hajime, W. eds, pp 335-338, Kluwer Academic Publishers, The Netherland
Galactolipid synthesis coordinates with the expression of photosynthetic activity via redox cascade.
Yamaryo, Y., Motohashi, K., Masuda, T., Shimada, H., Takamiya, K. and Ohta, H.
 In Advanced Research on Plant Lipids, Murata, N., Yamada, M., Nishida, I., Okuyama, H., Sekiya, J., Hajime, W. eds, pp 207-210, Kluwer Academic Publishers, The Netherland
Histochemical analysis of three MGD genes using promoter-GUS fusion system in Arabidopsis.
Kobayashi, K., Awai, K., Shimada, H., Masuda, T., Takamiya, K. and Ohta, H.
 In Advanced Research on Plant Lipids, Murata, N., Yamada, M., Nishida, I., Okuyama, H., Sekiya, J., Hajime, W. eds, pp 199-202, Kluwer Academic Publishers, The Netherland
DNAアレイ（DNAチップ）法を用いた遺伝子発現解析．
関本結子，大林武，太田啓之
化学装置，45: 32-35.
33Pを用いた遺伝子発現の網羅的解析．
大林武，関本結子，太田啓之
ISOTOPE NEWS，5月号，16-18.
高等植物のグリセロ糖脂質の生合成を担う糖転移酵素とその多様な機能.
山領和紀，太田啓之
酵素工学ニュース, 50: 38-50.
2002
Enzymatic transformation of lipids as a plant defense mechanism.
Shibata, D. and Ohta, H.
Lipid Biotechnology, Marcel Dekker Inc., 141-155.
Identification of two differentially regulated isoforms of protochlorophyllide oxidoreductase (POR) from tobacco revealed a wide variety of light- and development-dependent regulations of POR gene expression among angiosperms.
Masuda, T., Fusada, N., Shiraishi, T., Kuroda, H., Awai, K., Shimada, H., Ohta, H. and Takamiya, K.
Photosynth. Res.,74, 165-172.
Two types of ferrochelatase in photosynthetic and non-photosynthetic tissues of cucumber; their difference in phylogeny, gene expression and localization.
Suzuki, T., Masuda, T., Singh, D. P., Tan, F. C., Tsuchiya, T., Shimada, H., Ohta, H., Smith, A. G. and Takamiya, K.
J. Biol. Chem., 277, 4731-4737.
シロイヌナズナDNAアレイコンソーシアム（JCAA）の活動
藤原　徹，太田　啓之，金丸　研吾
蛋白質核酸酵素, 47: 91-93.
2001
Effects of light and phytohormones on the expression of cucumber ferrochelatases.
Suzuki, T., Masuda, T., Shimada, H., Ohta, H. and Takamiya, K.
PS2001 Proceedings: 12th International Congress on Photosynthesis. CSIRO Publishing: Melbourne, Australia, 2001.
Two distinct isopentenyl diphosphate isomerases in cytosol and plastid are differentially induced by environmental stresses in tobacco.
Nakamura,A., Shimada,H., Masuda,T., Ohta, H. and Takamiya, K.
FEBS Lett., 506: 61-64.
Abstract Full Text
Two types of MGDG synthase genes, found widely in both "16:3" and "18:3" plants, differentially mediate galactolipid syntheses in photosynthetic and non-photosynthetic tissues in Arabidopsis thaliana.
Awai, K., Marechal, E., Block, M. A., Brun, D., Masuda, T., Shimada, H., Takamiya, K., Ohta, H. and Joyard, J.
Proc. Natl. Acad. Sci. USA, 98: 10960-10965.
Abstract Full Text
Monitoring of methyl jasmonate-responsive genes in Arabidopsis by cDNA macroarray: Self-activation of jasmonic acid biosynthesis and crosstalk with other phytohormone signaling pathways.
Sasaki, Y., Asamizu, E., Shibata, D., Nakamura, Y., Kaneko, T., Awai, K., Amagai, M., Kuwata, C., Tsugane, T., Masuda, T., Shimada, H., Takamiya, K., Ohta, H. and Tabata, S.
DNA Res., 8: 153-161.
Abstract Full Text
Accumulation of plant galactolipid affects cell morphology of Escherichia coli.
Gad, M., Awai, K., Shimojima, M., Yamaryo, Y., Shimada, H., Masuda, T., Takamiya, K., Ikai, A. and Ohta, H.
Biochem. Biophys. Res. Commun., 286: 114-118.
Abstract PDF
Isolation of protease component from maize cysteine protease-cystatin complex: Release of cystatin is not crucial for the activation of the cyteine protease.
Yamada, T., Kondo, A., Ohta, H., Masuda, T., Shimada, H. and Takamiya, K.
Plant Cell Physiol, 42: 710-716.
Abstract Full Text
Cytokinin-induced transcriptional activation of NADPH-protochlorophyllide oxidoreductase gene in cucumber.
Kuroda, H., Masuda, T., Fusada, N., Ohta, H. and Takamiya, K.
J. Plant Res., 114: 1-7.
植物の葉の緑色はどのようにして分解されるか？
土屋徹，太田啓之，高宮建一郎
化学と生物，39: 580-587.(Review)
2000
Glyceroglycolipids of photosynthetic organisms -Their biosynthesis and evolutionary origin.
Ohta, H., Awai, K. and Takamiya, K.
Trends in Glycoscience and Glycotechnology., 12: 241-253.(Review)
A Cysteine Protease from maize isolated in a complex with cystatin.
Yamada, T., Ohta, H., Shinohara, A., Iwamatsu, A., Shimada, H., Tsuchiya, T., Masuda, T. and Takamiya, K.
Plant Cell Physiol., 42: 185-191.
Abstract
Overexpression, enzymatic properties and localization of a ferrochelatase of cucumber.
Suzuki, T., Masuda, T., Inokuchi, H., Shimada, H., Ohta, H. and Takamiya, K.
Plant Cell Physiol., 42: 192-199.
Abstract
Expression of NADPH-protochlorophyllide oxidoreductase gene in fully green leaves of cucumber.
Kuroda, H., Masuda, T., Fusada, N., Ohta, H. and Takamiya, K.
Plant Cell Physiol., 42: 226-229.
Abstract
NADPH-protochlorophyllide oxidoreductase in cucumber is encoded by a single gene and its expression is transcriptionally enhanced by illumination.
Fusada, N., Masuda, T., Kuroda, H., Shiraishi, T., Shimada, H., Ohta, H. and Takamiya, K.
Photosynth. Res., 64: 147-154.
Abstract
Degradation pathway(s) of chlorophyll: what has gene cloning revealed?
Takamiya, K., Tsuchiya, T., and Ohta, H.
Trends Plant Sci., 5: 426-431. (Review)
Abstract PDF
Identification of a novel light-inducible isoform of NADPH-protochlorophyllide oxidoreductase from Arabidopsis thaliana.
Oosawa, N., Masuda, T., Awai, K., Fusada, N., Shimada, H., Ohta, H. and Takamiya, K.
FEBS Lett.,474: 133-136.
Abstract Full Text
Genome-wide expression�仁onitoring of jasmonate-responsive genes of Arabidopsis using cDNA arrays.
Sasaki, Y., Asamizu, E., Shibata, D., Nakamura, Y., Kaneko, T., Awai, K., Masuda, T., Shimada, H., Takamiya, K., Tabata, S. and Ohta, H.
Biochem. Soc. Trans., 28: 863-864.
Abstract Full Text
Transcriptional regulation by light and phytohormones of the MGD gene in cucumber.
Yamaryo, Y., Kanai, D., Awai, K., Masuda, T., Shimada, H., Takamiya, K. and Ohta, H.
Biochem. Soc. Trans., 28: 738-740.
Abstract Full Text
The multigene family of monogalactosyl diacylglycerol synthases.
Marechal, E., Awai, K., Block, M. A., Brun, D., Masuda, T., Shimada, H., Takamiya, K., Ohta, H. and Joyard, J.
Biochem. Soc. Trans., 28: 732-738.
Abstract Full Text
Biosynthesis of zinc-containing bacteriochlorophyll a.
Takamiya, K., Masuda, T., Inoue, K., Masuda, M., Nagura, A., Nagayama, M., Tamaki, A., Ohta, H. and Shimada, H.
Porphyrins, 9: 227-233.
Identification and physiological role of a novel gene of NADPH-protochlorophyllide oxidoreductase in Arabidopsis thaliana.
Fusada, N., Oosawa, N., Masuda, T., Awai, K., Shiraishi, T., Shimada, H., Ohta, H., Ohto, M., Nakamura, K., Kato, T., Tabata, S. and Takamiya, K.
Porphyrins 9: 257-260.
Glyceroglycolipids of photosynthetic organisms -Their biosynthesis and evolutionary origin-.
Ohta, H., Awai, K. and Takamiya, K.
Trend. Glycosci. Glycotech., 12: 241-253. (Review)
1999
Purification and some properties of pheophorbidase in Chenopodium album.
Watanabe, K., Ohta, H., Tsuchiya, T., Mikami, B., Masuda, T., Shioi, Y. and Takamiya, K.
Plant Cell Physiol., 40: 104-108.
Photosynthetic regulatory gene cluster in an aerobic photosynthetic bacterium, Roseobacter denitrificans.
Nishimura, K., Shimada, H., Shinmen, T., Obayashi, T., Masuda, T., Ohta, H. and Takamiya, K.
J. Gen. Appl. Microbiol., 45: 129-134.
Magnesium insertion by magenesium chelatase in the biosynthesis of zinc-bacteriochlorophyll a in an aerobic acidophilic bacterium Acidiphilium rubrum.
Masuda, T., Inoue, K., Masuda, M., Nagayama, M., Tamaki, A., Ohta, H., Shimada, H. and Takamiya, K.
J. Biol. Chem., 274: 33594-33600.
Abstract Full Text
Cloning of chlorophyllase, the key enzyme in chlorophyll degradation: Finding of a lipase motif and induction by methyl jasmonate.
Tsuchiya, T., Ohta, H., Okawa, K., Iwamatsu, A., Shimada, H., Masuda, T. and Takamiya, K.
Proc. Natl. Acad. Sci. USA, 96: 15362-15367.
Abstract Full Text
Biochemical and topological properties of type A MGDG synthase, a spinach chloroplast envelope enzyme catalyzing the synthesis of both prokaryotic and eukaryotic
Miege, C., Marechal, E., Shimojima, M., Awai, K., Block, M.A., Ohta, H., Takamiya, K., Douce, R. and Joyard, J.
MGDG. Eur. J. Biochem. 265: 990-1001.
Abstract Full Text
1998
Purification of a novel type of SDS-dependent protease in maize using monoclonal antibody.
Yamada, T., Ohta, H., Masuda, T., Ikeda, M., Tomita, N., Ozawa, A., Shioi, Y. and Takamiya, K.
Plant Cell Physiol., 39: 106-114.
Abstract
Cloning and expression of the soybean chlH gene encoding a subunit of Mg-chelatase and localization of the Mg2+ concentration-dependent ChlH protein within the chloroplast.
Nakayama, M., Masuda, T., Bando, T., Yamagata, H., Ohta, H. and Takamiya, K.
Plant Cell Physiol., 39: 275-284.
Abstract
Growth, pigmentation, and expression of the puf and puc operon in a light-responding-repressor (SPB)-disrupted Rhodobacter sphaeroides.
Nishimura, K., Shimada, H., Hatanaka, S., Mizoguchi, H., Ohta, H., Masuda, T. and Takamiya, K.
Plant Cell Phsiol., 39: 411-417.
Abstract
Analysis of bacteriochlorophylls in zinc-containing bacteriochlorophyll producing aerobic bacterium, Acidiphilium rubrum, by high-performance liquid chromatography.
Masuda, T., Nagayama, M., Inoue, K., Shimada, H., Ohta, H., and Takamiya, K.
In Photosynthesis: Mechanisms and Effects, G. Garab ed, Vol. IV, pp 3233-3236, Kluwer Academic Publishers, The Netherlands
Properties of orf5-disrupted and overexpressed Rhodobacter sphaeroides mutants.
Obayashi, T., Shimada, H., Nishimura, K., Masuda, T., Ohta, H. and Takamiya, K.
In Photosynthesis: Mechanisms and Effects, G. Garab ed, Vol. IV, pp 2893-2896, Kluwer Academic Publishers, The Netherlands
Plant MGDG synthases: their evolutionary aspects and light and hormonal control of the mRNA expression during developmental stage.
Ohta, H., Shimojima, M., Awai, K., Kanai, D., Masuda, T. and Takamiya, K.
In Advances in Plant Lipid Research, Sanchez, J., Cerda-Olmedo, E., Martinez-Force, E. eds, pp 367-370, Universidad de Sevilla, Secretariado de Publicaciones, Spain
Molecular identification of the MGDG synthase from spinach chloroplast envelope.
Miege, C., Marechal, E., Block, M. A., Shimojima, M., Awai, K., Ohta, H., Takamiya, K. Joyard, J.
In Advances in Plant Lipid Research, Sanchez, J., Cerda-Olmedo, E., Martinez-Force, E. eds, pp 247-250, Universidad de Sevilla, Secretariado de Publicaciones, Spain
1997
Nucleotide sequence and transcriptional analysis of the flanking region of the gene (spb) for the trans-acting factor that controls light-mediated expression of the puf operon in Rhodobacter sphaeroides.
Mizoguchi, H., Masuda, T., Nishimura, K., Shimada, H., Ohta, H., Shioi, Y. and Takamiya, K.
Plant Cell Physiol., 38: 558-567.
Abstract
Cloning of the gene for monogalactosyldiacylglycerol synthase and its evolutionary origin.
Shimojima, M., Ohta, H., Iwamatsu, A, Masuda, T., Shioi, Y. and Takamiya, K.
Proc. Natl. Acad. Sci. USA, 94: 333-337.
Abstract Full Text
Molecular cloning of a cDNA encoding cytochrome P450 CYP93A2 (accession No. D86531) from soybean suspension-cultured cells (PGR97-087).
Suzuki, G., Ohta, H., Kato, T., Shibata, D., Masuda, T. and Takamiya, K.
Plant Physiol., 114: 748.
Cloning and sequencing of a chlD gene (accession No. AB003135) encoding a subunit of magnesium-chelatase from the cyanobacterium Synechococcus sp. PCC7942 (PGR97-091).
Masuda, T., Nakayama, M., Ohta, H. and Takamiya, K.
Plant Physiol., 114: 749.
Distinct pathway for jasmonate- and elicitor-induced expressions of a cytochrome P450 gene in soybean suspension-cultured cells.
Ohta, H., Suzuki, G., Awai, K., Masuda, T., Kato, T., Shibata, D. and Takamiya, K.
Physiol. Plant., 100: 647-652.
Purification and characterization of two isozymes of chlorophyllase from mature leaves of Chenopodium album.
Tsuchiya, T., Ohta, H., Masuda, T., Mikami, B., Kita, N., Shioi, Y. and Takamiya, K.
Plant Cell Physiol., 38: 1026-1031.
高等植物の主要糖脂質の合成を担う糖脂質合成酵素　ーその遺伝子クローニングがもたらすものー．
太田啓之，下嶋美恵，増田建，高宮建一郎
ブレインテクノニュース60: 5-10.
葉緑体チラコイド膜糖脂質の分子構築　そのメカニズムと起源．
太田啓之，下嶋美恵，粟井光一郎、増田建，高宮建一郎
蛋白質核酸酵素, 42: 5-10. (Review)
Abstract