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最近の論文
総説,教科書など
過去の業績

最近の論文

2015

  • Hikaru Saito, Takaya Oikawa, Shin Hamamoto, Yasuhiro Ishimaru, Miyu Kanamori-Sato, Yuko Sasaki-Sekimoto, Tomoya Utsumi, Jing Chen, Yuri Kanno, Shinji Masuda, Yuji Kamiya, Mitsunori Seo, Nobuyuki Uozumi, Minoru Ueda & Hiroyuki Ohta.The jasmonate-responsive GTR1 transporter is required for gibberellin-mediated stamen development in ArabidopsisNat Commun. (2015) 6 6095
  • Yuta Ihara, Hiroyuki Ohta, Shinji Masuda.A highly sensitive quantification method for the accumulation of alarmone ppGpp in Arabidopsis thaliana using UPLC-ESI-qMS/MS. J Plant Res. 2015, 128, 511-518.
  • Takao Koeduka, Kimitsune Ishizaki, Cynthia Mugo Mwenda, Koichi Hori, Yuko Sasaki-Sekimoto, Hiroyuki Ohta, Takayuki Kohchi & Kenji Matsui.Biochemical characterization of allene oxide synthases from the liverwort Marchantia polymorpha and green microalgae Klebsormidium flaccidum provides insight into the evolutionary divergence of the plant CYP74 family.Planta., 2015 242 1175-1186
  • Mie Shimojima, Yuka Madoka,Ryota Fujiwara, Masato Murakawa, Yushi Yoshitake, Keiko Ikeda, Ryota Koizumi, Keiji Endo, Katsuya Ozaki, and Hiroyuki Ohta.An engineered lipid remodeling system using a galactolipid synthase promoter during phosphate starvation enhances oil accumulation in plants.Front Plant Sci.,2015 6 664
  • Masako Iwai, Koichi Hori, Yuko Sasaki-Sekimoto, Mie Shimojima and& Hiroyuki Ohta.Manipulation of oil synthesis in Nannochloropsis strain NIES-2145 with a phosphorus starvation?inducible promoter from Chlamydomonas reinhardtii.Frontiers in Microbiology.,2015 6 1-15
  • Sousuke Imamura, Yasuko Kawase, Ikki Kobayashi, Toshiyuki Sone, Atsuko Era, Shin-ya Miyagishima, Mie Shimojima, Hiroyuki Ohta, Kan Tanaka.Target of rapamycin (TOR) plays a critical role in triacylglycerol accumulation in microalgae. Plant Mol Biol., 2015, 89, 309-318.

    2014

    • Koichi Kobayashi, Sho Fujii, Daichi Sasaki, Shinsuke Baba, Hiroyuki Ohta, Tatsuru Masuda, and Hajime Wada.Transcriptional regulation of thylakoid galactolipid biosynthesis coordinated with chlorophyll biosynthesis during the development of chloroplasts in Arabidopsis.Front Plant Sci., 2014; 5: 272.
    • Koichiro Awai, Hiroyuki Ohta, and Naoki Sato.Oxygenic photosynthesis without galactolipids.,Proc. Natl. Acad. Sci. USA. 2014, 111, 13571?13575
    • Naoyuki Tajima, Shusei Sato, Fumito Maruyama, Ken Kurokawa, Hiroyuki Ohta, Satoshi Tabata, Kohsuke Sekine, Takashi Moriyama, Naoki Sato.Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum.J Plant Res., 2014, 127, 389-397
    • Masanori Satoh, Yoshihito Tokaji, Atsushi J. Nagano, Ikuko Hara-Nishimura, Makoto Hayashi, Mikio Nishimura, Hiroyuki Ohta, Shinji Masuda.Arabidopsis mutants affecting oxylipin signaling in photo-oxidative stress responses.Plant Physiol Biochem., 2014, 81, 90-95.
    • Yuki Nakamura, Norman Z. W. Teo, Guanghou Shui, Christine H. L. Chua, Wei-Fun Cheong, Sriram Parameswaran, Ryota Koizumi, Hiroyuki Ohta, Markus R. Wenk, Toshiro Ito.Transcriptomic and lipidomic profiles of glycerolipids during Arabidopsis flower development.New Phytologist 2014., 203, 310-322.
    • Taki-Nakano N, Ohzeki H, Kotera J, Ohta, H. Cytoprotective effects of 12-oxo phytodienoic acid, a plant-derived oxylipin jasmonate, on oxidative stress-induced toxicity in human neuroblastoma SH-SY5Y cells. Biochimica et Biophysica Acta (BBA)-General Subjects., 2014, 1840.12: 3413-3422.
    • Sato R, Ohta H, Masuda S. Prediction of respective contribution of linear electron flow and PGR5-dependent cyclic electron flow to non-photochemical quenching induction., Plant Physiol Biochem. 2014 Aug;81:190-6.
    • Iwai M, Ikeda K, Shimojima M, Ohta H. Enhancement of extraplastidic oil synthesis in Chlamydomonas reinhardtii using a type-2 diacylglycerol acyltransferase with a phosphorus starvation-inducible promoter., Plant Biotechnol J. 2014 Aug;12(6):808-19.
    • Murakawa M, Shimojima M, Shimomura Y, Kobayashi K, Awai K, Ohta H. Monogalactosyldiacylglycerol synthesis in the outer envelope membrane of chloroplasts is required for enhanced growth under sucrose supplementation., Front Plant Sci. 2014 Jun 23;5:280.
    • Hori K, Maruyama F, Fujisawa T, Togashi T, Yamamoto N, Seo M, Sato S, Yamada T, Mori H, Tajima N, Moriyama T, Ikeuchi M, Watanabe M, Wada H, Kobayashi K, Saito M, Masuda T, Sasaki-Sekimoto Y, Mashiguchi K, Awai K, Shimojima M, Masuda S, Iwai M, Nobusawa T, Narise T, Kondo S, Saito H, Sato R, Murakawa M, Ihara Y, Oshima-Yamada Y, Ohtaka K, Satoh M, Sonobe K, Ishii M, Ohtani R, Kanamori-Sato M, Honoki R, Miyazaki D, Mochizuki H, Umetsu J, Higashi K, Shibata D, Kamiya Y, Sato N, Nakamura Y, Tabata S, Ida S, Kurokawa K, Ohta H. Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation., Nat Commun. 2014 May 28;5:3978.
    • Masuda S, Tokaji Y, Kobayashi Y, Ohta H. Mechanisms of induction of the stress-responsive transcription factors HsfA2 and DREB2A by 12-oxo-phytodienoic acid in Arabidopsis thaliana., Biosci Biotechnol Biochem. 2014 Apr;78(4):647-50.
    • Yuzawa Y, Shimojima M, Sato R, Mizusawa N, Ikeda K, Suzuki M, Iwai M, Hori K, Wada H, Masuda S, Ohta H. Cyanobacterial monogalactosyldiacylglycerol-synthesis pathway is involved in normal unsaturation of galactolipids and low-temperature adaptation of Synechocystis sp. PCC 6803., Biochim Biophys Acta. 2014 Apr 4;1841(4):475-83.
    • Sasaki-Sekimoto Y, Saito H, Masuda S, Shirasu K, Ohta H. Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling., Plant Signal Behav. 2014 Jan 6;9(1).

    2013

    • Sasaki-Sekimoto Y, Jikumaru Y, Obayashi T, Saito H, Masuda S, Kamiya Y, Ohta H, Shirasu K. Basic helix-loop-helix transcription factors JASMONATE-ASSOCIATED MYC2-LIKE1 (JAM1), JAM2, and JAM3 are negative regulators of jasmonate responses in Arabidopsis., Plant Physiol. 2013 Sep;163(1)
    • Masuda S, Hori K, Maruyama F, Ren S, Sugimoto S, Yamamoto N, Mori H, Yamada T, Sato S, Tabata S, Ohta H, Kurokawa K. Whole-Genome Sequence of the Purple Photosynthetic Bacterium Rhodovulum sulfidophilum Strain W4., Genome Announc., 2013 Aug 8;1(4).
    • Yuzawa, Y., Shimojima, M., Sato, R., Mizusawa, N., Ikeda, K., Suzuki, M., Iwai, M., Hori, K., Wada, H., Masuda, D., Ohta, H. Cyanobacterial monogalactosyldiacylglycerol-synthesis pathway is involved in normal unsaturation of galactolipids and low-temperature adaptation of Synechocystis sp. PCC 6803., Biochim Biophys Acta., (in press)
    • Shimojima, M., Watanabe, T., Madoka, Y., Koizumi, R., Yamamoto, M.P., Masuda, K., Yamada, K., Masuda, S., Ohta, H. Differential regulation of two types of monogalactosyldiacylglycerol synthase in membrane lipid remodeling under phosphate-limited conditions in sesame plants. Front Plant Sci. 2013, 4, 469
    • Kobayashi K, Narise T, Sonoike K, Hashimoto H, Sato N, Kondo M, Nishimura M, Sato M, Toyooka K, Sugimoto K, Wada H, Masuda T, Ohta H. (2013) Role of galactolipid biosynthesis in coordinated development of photosynthetic complexes and thylakoid membranes during chloroplast biogenesis in Arabidopsis. Plant J. 2013 Jan;73(2):250-261.
    • Chen J, Sonobe K, Ogawa N, Masuda S, Nagatani A, Kobayashi Y, Ohta H. (2013) Inhibition of arabidopsis hypocotyl elongation by jasmonates is enhanced under red light in phytochrome B dependent manner. J Plant Res. 2013 Jan;126(1):161-8.
    • Ren S, Sato R, Hasegawa K, Ohta H, Masuda S. (2013) A predicted structure for the PixD-PixE complex determined by homology modeling, docking simulations, and a mutagenesis study. Biochemistry. 2013 Feb 19;52(7):1272-9.
    • Kobayashi Yasuhumi, Kobayashi Yuriko, Watanabe T, Shaff JE, Ohta H, Kochian L, Wagatsuma T, Kinraide, TB and Koyama H. (2013) Molecular and physiological analysis of Al3+ and H+ rhizotoxicities at moderately acidic conditions. Plant Physiology Preview. 2013 July DOI:10.1104/pp.113.222893
    • Masuda S, Hori K, Maruyama F, Ren S, Sugimoto S, Yamamoto N, Mori H, Yamada T, Sato S, Tabata S, Ohta H, Kurokawa K. (2013) Whole-Genome Sequence of the Purple Photosynthetic Bacterium Rhodovulum sulfidophilum Strain W4. Genome Announc. 2013 Aug 8;1(4).
    • Sasaki-Sekimoto Y, Jikumaru Y, Obayashi T, Saito H, Masuda S, Kamiya Y, Ohta H, Shirasu K. (2013) Basic Helix-Loop-Helix Transcription Factors JASMONATE-ASSOCIATED MYC2-LIKE1 (JAM1), JAM2, and JAM3 Are Negative Regulators of Jasmonate Responses in Arabidopsis. Plant Physiol. 2013 Sep;163(1):291-304.

    2012

    • Sutheeworapong S, Ota M, Ohta H, Kinoshita K. (2012) A novel biclustering approach with iterative optimization to analyze gene expression data Advances and Applications in Bioinformatics and Chemistry. 2012:5;23-59.
    • Ren S, Sawada M, Hasegawa K, Hayakawa Y, Ohta H, Masuda S. (2012) A PixD--PapB Chimeric Protein Reveals the Function of the BLUF Domain C-Terminal α-Helices for Light Signal Transduction. Plant Cell Physiol. 2012 Sep;53(9):1638-47.
    • Kobayashi K, Baba S, Obayashi T, Sato M, Toyooka K, Keranen M, Aro EM, Fukaki H, Ohta H, Sugimoto K, Masuda T. (2012) Regulation of root greening by light and auxin/cytokinin signaling in Arabidopsis. Plant Cell. 2012 Mar;24(3):1081-95.
    • Yuzawa Y, Nishihara H, Haraguchi T, Masuda S, Shimojima M, Shimoyama A, Yuasa H, Okada N, Ohta H. (2012) Phylogeny of galactolipid synthase homologs together with their enzymatic analyses revealed a possible origin and divergence time for photosynthetic membrane biogenesis. DNA Res. 2012;19(1):91-102.
    • Igisu M, Takai K, Ueno Y, Nishizawa M, Nunoura T, Hirai M, Kaneko M, Naraoka H, Shimojima M, Hori K, Nakashima S, Ohta H, Maruyama S, Isozaki Y. (2012) Domain-level identification and quantification of relative prokaryotic cell abundance in microbial communities by Micro-FTIR spectroscopy. Environmental Microbiology Reports (2012) 4(1), 42-49.

    2011

    • Sogabe Y, Nakamura H, Nakagawa T, Hasegawa S, Asano T, Ohta H, Yamaguchi K, Mueller MJ, Kodama H, Nishiuchi T. (2011) Visualization of wounding-induced root-to-shoot communication in Arabidopsis. Plant Signal Behav. 2011 Jul 1;6(7).
    • Hasegawa S, Sogabe Y, Asano T, Nakagawa T, Nakamura H, Kodama H, Ohta H, Yamaguchi K, Mueller MJ, Nishiuchi T.(2011) Gene expression analysis of wounding-induced root-to-shoot communication in Arabidopsis thaliana. Plant Cell Environ. 2011 May;34(5):705-16.
    • Masuda, S., Harada, J., Yokono, M., Yuzawa, Y., Shimojima, M., Murofushi, K., Tanaka, H., Masuda, H., Murakawa, M., Haraguchi, T., Kondo, M., Nishimura, M., Yuasa, H., Noguchi, M., Oh-oka, H., Tanaka, A., Tamiaki, H. and Ohta, H. (2011) A monogalactosyldiacylglycerol synthase found in the green sulfur bacterium Chlorobaculum tepidum reveals important roles for galactolipids in photosynthesis. Plant Cell. 23: 2644-2658.
    • Shimojima M, Ohta H. (2011) Critical regulation of galactolipid synthesis controls membrane differentiation and remodeling in distinct plant organs and following environmental changes. Prog Lipid Res. 21;50(3):258-266.
    • Tajima N, Sato S, Maruyama F, Kaneko T, Sasaki NV, Kurokawa K, Ohta H, Kanesaki Y, Yoshikawa H, Tabata S, Ikeuchi M, Sato N. (2011) Genomic Structure of the Cyanobacterium Synechocystis sp. PCC 6803 Strain GT-S. DNA Res. 10.1093/dnares/dsr026

    2010

    • Zulkifli L, Akai M, Yoshikawa A, Shimojima M, Ohta H, Guy HR, Uozumi N.(2010) The KtrA and KtrE subunits are required for Na+-dependent K+ uptake by KtrB across the plasma membrane in Synechocystis sp. strain PCC 6803. J Bacteriol. 192(19):5063-70.
    • Kanazawa, T., Ren, S., Maekawa, M., Hasegawa, K., Arisaka, F., Hyodo, M., Hayakawa, Y., Ohta, H. and Masuda, S. (2010) Biochemical and physiological characterization of a BLUF protein-EAL protein complex involved in blue light-dependent degradation of cyclic diguanylate in the purple bacterium Rhodopseudomonas palustris. Biochemistry 49: 10647-10655.
    • Dubots E, Audry M, Yamaryo Y, Bastien O, Ohta H, Breton C, Marechal E, Block MA. (2010) Activation of the chloroplast monogalactosyldiacylglycerol synthase MGD1 by phosphatidic acid and phosphatidylglycerol. J Biol Chem. 26;285(9):6003-11.
    • Narise T, Kobayashi K, Baba S, Shimojima M, Masuda S, Fukaki H, Ohta H (2010) Involvement of auxin signaling mediated by IAA14 and ARF7/19 in membrane lipid remodeling during phosphate starvation. Plant Mol Biol. 72(4-5):533-44.

    2009

    • Nakamura, Y., Koizumi, R., Shui, G., Shimojima, M., Wenk, M.R., Ito, T., Ohta, H. Arabidopsis lipins mediate eukaryotic pathway of lipid metabolism and cope critically with phosphate starvation. Proc. Natl. Acad. Sci. USA 2009, 106, 20978-20983
    • Igisu M, Uenod Y, Shimojima M, Nakashima S, Stanley M. Awramikg, Ohta H, Maruyama S. (2009) Micro-FTIR spectroscopic signatures of Bacterial lipids in Proterozoic microfossils. Precambrian Research. 173 19-26
    • Okazaki Y, Shimojima M, Sawada Y, Toyooka K, Narisawa T, Mochida K, Tanaka H, Matsuda F, Hirai A, Hirai MY, Ohta H, Saito K.(2009) A Chloroplastic UDP-Glucose Pyrophosphorylase from Arabidopsis Is the Committed Enzyme for the First Step of Sulfolipid Biosynthesis. Plant Cell.21(3):892-909.
    • Masuda, S., Ikeda, R., Masuda, T., Hashimoto, H., Tsuchiya, T., Kojima, H., Nomata, J., Fujita, Y., Mimuro, M., Ohta, H. and Takamiya, K. (2009) Prolamellar bodies formed by cyanobacterial protochlorophyllide oxidoreductase in Arabidopsis. Plant J.58:952-960.
    • Nakamura, Y., Kobayashi, K., Ohta, H. (2009) Activation of Galactolipid Biosynthesis in Development of Pistils and Pollen Tubes. Plant Physiol Biochem.47(6):535-539.
    • Kobayashi K, Awai K, Nakamura M, Nagatani A, Masuda T, and Ohta H. (2009) Type B monogalactosyldiacylglycerol synthases are involved in phosphate starvation induced lipid remodeling and are crucial for low-phosphate adaptation. Plant J.57(2):322-31.
    • Shimojima M, Tsuchiya M and Ohta H (2009) Temperature-dependent hyper-activation of monoglucosyldiacylglycerol synthase is post-translationally regulated in Synechocystis sp. PCC 6803. FEBS Lett, 583, 2372-2376.
    • Obayashi T, Hayashi S, Saeki M, Ohta H, Kinoshita K. (2009) ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Res., 37, D987-91.
    • Kobayashi K, Nakamura Y, Ohta H (2009) Type A and type B monogalactosyldiacylglycerol synthases are spatially and functionally separated in plastids of higher plants. Plant Physiol Biochem. 47(6):518-525.

    2008

    • Gaude N., Nakamura Y., Scheible W.-R. Ohta H. and Dormann P. (2008) Phospholipase C5 (NPC5) is involved in galactolipid accumulation during phosphate limitation in leaves of Arabidopsis. Plant J. 56(1):28-39.
    • Obayashi, T, Hayashi S, Shibaoka M, Saeki M, Ohta H, Kinoshita K, (2008) COXPRESdb: a database of coexpressed gene networks in mammals. Nucleic Acids Res. Database issue ,Oxford University Press,:77-82.
    • Masuda, S., Mizusawa, K., Narisawa, T., Tozawa, Y., Ohta, H. and Takamiya, K. (2008) The bacterial stringent response, conserved in chloroplasts, controls plant fertilization. Plant Cell Physiol. 49: 135-141.
    • Mizusawa, K., Masuda, S. and Ohta, H. (2008) Expression profiling of four RelA/SpoT-like proteins, homologues of bacterial stringent factors, in Arabidopsis thaliana. Planta 228: 553-562.
    • Masuda, S., Tozawa, Y. and Ohta, H. (2008) Possible targets of “magic spots” in plant signaling. Plant Signaling Behavior. 3:1021-1023
    • Masuda, S., Hasegawa, K., Ohta, H. and Ono, T. (2008) Crucial role in light signal transduction for the conserved Met93 of the BLUF protein PixD/Slr1694. Plant Cell Physiol. 49(10):1600-6.

総説・教科書など

  • Ohta H, Yuzawa Y, Shimojima M. (2012) Galactoclycerolipids Why are these lipids so commonly abundant in photosynthetic organisms? ASBMB today August 2012: 28-29.
  • Nakamura Y, Kobayashi K, Shimojima M and Ohta H (2010) Biosynthesis and Function of Monogalactosyldiacylglycerol, the Signature Lipid of Chloroplasts. In “The Chloroplast Biochemistry, Molecular Biology and Bioengineering” (Rebeiz, CA ed) Springer-Verlag, pp185-202.
  • Nakamura Y, and Ohta H (2010) Phosphatidic acid phosphatases in seed plants In “Lipid Singaling in Plants” (Munnik T, ed), Springer-Verlag Berlin Heidelberg, pp131-141.
  • 中村友輝、太田啓之 (2010) 高等植物ホスファチジン酸ホスファターゼの膜脂質合成, シグナリングにおける機能 生化学 Vol 82 (12) 1137-1141.
  • Shimojima, M., Nakamura, Y., Ohta, H. (2009) Biosynthesis and Function of Chloroplast Lipids: Advances in Photosynthesis and Respiration (Wada, H., Murata, N., Eds.), Vol. 30, pp. 35-55, Springer, Dordrecht, The Netherlands.
  • Kobayashi, K., Ohta, H. (2009) Galactolipid synthesis and its role in membrane biogenesis in higher plants. Plant Morphology. Vol.21 No.1
  • 岡咲洋三、下嶋美恵、太田啓之、斉藤和季 (2009) 脂質メタボローム解析でスルホ脂質生合成の鍵となる新規遺伝子を発見 バイオサイエンスとインダストリー JBA Vol.67,7, 342-346
  • Kobayashi, K., Nakamura, Y., Ohta, H. (2009) Type A and type B monogalactosyldiacylglycerol synthases are spatially and functionally separated in plastids of higher plants. Plant Physiol Biochem.47(6):518-525.
  • Ikeda, R., Masuda S., Tsuchiya, T. Mimuro, M., Ohta, H. and Takamiya, K. (2008)Preliminary characterization of NADPH:protochlorophyllide oxidoreductase (POR) fromthe cyanobacterium Gloeobacter violaceus. In Photosynthesis. Energy from the Sun (Allen, J. F., Gantt, E., Golbeck, J. H. and Osmond, B., eds). Heidelberg: Springer, pp.1103-1106.
  • 下嶋美恵、小林康一、太田啓之, (2008) 葉緑体チラコイド膜を構成するグリセロ糖脂質の生合成と機能 化学と生物 学会出版センター 46, 5, 330-338 総説
  • Shimojima, M., Nakamura, Y. and Ohta, H. (2008) Biosynthesis of Chloroplast Lipids. Lipids in Photosynthesis: Essential and Regulatory Functions eds by Wada, H. and Murata, N. Springer
  • 化学と生物 (2008) 葉緑体チラコイド膜を構成するグリセロ糖脂質の生合成と機能 下嶋美恵、小林康一、太田啓之 46, 5, 330-338
  • バイオ系のための基礎化学問題集 (2007) 講談社サイエンティフィック I-13章 P48-50. 光合成, 増田真二、太田啓之
  • 環境とバイオ(2007)工学図書 3章 P25-37. バイオと環境適応、太田啓之
  • C. Benning and H. Ohta(2005) Mini Review-Three enzyme systems for galactoglycerolipid biosynthesis are coordinately regulated in plants. J. Biol. Chem.280.4:2397-2400.
  • 多木 希, 関本(佐々木)結子,太田啓之(2004) 図解 バイオ活用技術のすべて 5-1 DNA マイクロアレイ 工業調査会 156-160
  • 関本(佐々木)結子,太田啓之(2004) ジャスモン酸類の機能とシグナル伝達 秀潤社 植物細胞工学シリーズ20 新版 植物ホルモンのシグナル伝達 第7章1:188-198
  • 小林康一,太田啓之(2004) リン酸欠乏時における膜脂質合成系の代謝変動と植物ホルモンによる制御 日本農芸化学会誌 78.10:977-980
  • Masuda, T. and Takamiya, K. (2004) Novel insights into the enzymology, regulation and physiological functions of light-dependent protochlorophyllide oxidoreductase in angiosperms. Photosynth. Res., 81: 1-29.
  • 増田建,高宮建一郎 (2004) 被子植物の葉緑体形成とプロラメラボディ-光依存性NADPH-Pchlide酸化還元酵素の生理機能を探る-.化学と生物, 42: 183-188

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